Selected publications

Valles-Colomer M#, Blanco-Míguez M, Manghi P, Asnicar F, Armanini F, Cumbo F, Huang KD, Manara S, Masetti G, Pinto F, Ricci L, Zolfo M, Farrant O, Goncalves A, Selma-Royo M, Binetti AG, Becerra JE, Han B, Lusingu J, Amuasi J, Amoroso L, Visconti A, Steves CM, Falchi M, Filosi M, Tett A, Last A, Xu Q, Qin N, Qin H, May J, Eibach D, Corrias MV, Ponzoni M, Pasolli E, Spector TD, Domenici E, Collado MC, Segata N# (2023). The person-to-person transmission landscape of the gut and oral microbiomes. Nature, 614:125-135. doi: 10.1038/s41586-022-05620-1.

Ianiro G*, Punčochář M*, Karcher N*, Porcari S, Armanini F, Asnicar F, Beghini F, Blanco-Míguez A, Cumbo F, Manghi P, Pinto F, Masucci L, Quaranta G, De Giorgi S, Sciumè GD, Bibbò S, Del Chierico F, Putignani L, Sanguinetti M, Gasbarrini A, Valles-Colomer M#, Cammarota G#, Segata N# (2022). Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases. Nature Medicine, 28:1913-1923.

Valles-Colomer M*, Bacigalupe R*, Vieira-Silva S*, Suzuki S, Darzi Y, Tito RY, Yamada T, Segata N, Raes J#, Falony G# (2022). Variation and transmission of the human gut microbiota across multiple familial generations. Nature Microbiology, 7(1):87-96. doi: 10.1038/s41564-021-01021-8.

Karcher N*, Nigro E*, Punčochář M, Blanco-Míguez A, Ciciani M, Manghi P, Zolfo M, Cumbo F, Manara S, Golzato D, Cereseto A, Arumugam M, Nam Bui TP, Tytgat HLP, Valles-Colomer M#, de Vos WM#, Segata N# (2021). Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly. Genome Biology, 22(1):1-24. doi: 10.1186/s13059-021-02427-7.

Valles-Colomer M, Falony G, Darzi Y, Tigchelaar EF, Wang J, Tito RY, Joossens M, Wijmenga C, Van Oudenhove L, Zhernakova A, Vieira-Silva S#, Raes J# (2019). The neuroactive potential of the human gut microbiota in quality of life and depression. Nature Microbiology, doi: 10.1038/s41564-018-0337-x.

Vieira-Silva S*, Sabino J*, Valles-Colomer M*, Falony G*, Kathagen G, Caenepeel C, Cleynen I, van der Merwe S, Vermeire S#, Raes J# (2019). Quantitative microbiome profiling disentangles inflammation- and bile duct obstruction-associated microbiota alterations across IBD/PSC diagnoses. Nature Microbiology, doi: 10.1038/s41564-019-0483-9.

You can find my full publication list on my Google Scholar profile or on the “CV” tab.